Plan for VizBi Tutorial

Updated: I have updated this after the tutorial

Today we went through three scripts rather than the full five, I had planned.

• http://rforbiochemists.blogspot.de/2016/03/illustrating-some-r-fundamentals-for.html
• Talks about functions, objects and packages and draws a simple graph
• http://rforbiochemists.blogspot.de/2016/03/gene-expression-analysis-and.html
• Talks about distance, clustering and principal component analysis
• http://rforbiochemists.blogspot.de/2016/03/gene-expression-analysis-and_7.html
• Talks about using limma to detect differences and drawing volcano plots

For participants, I wrote this script because of people who were interested in ggplot2. It talks about faceting which is an important part of ggplot2.

• http://rforbiochemists.blogspot.de/2016/03/ggplot-script-for-vizbi-2016.html

This other script is a proteomic example that talks about clustering and write a volcano plot.  

• http://rforbiochemists.blogspot.de/2016/02/visualising-some-cll-proteomic-data-for.html

In response to questions, I have a couple of scripts that do relatively simple image analysis:

• http://rforbiochemists.blogspot.de/2015/12/counting-cell-nuclei-in-image.html
• http://rforbiochemists.blogspot.de/2015/08/opening-image-of-leukemia-cell-in-r.html