The old code (pre ggplot 2.0.0) has the formula as an argument in the geom_smooth() function. I've changed one of the scripts - the one for the LD50 plot. I'll change the enzymology scripts over the next few days.
Old code:
# Add the line to graph
p <- p + geom_smooth(method = "nls",
formula = y ~ bot+(top-bot)/(1+( x / LD50)^slope),
start=list(bot=20, top=95, LD50=3, slope=-12),
se = F, size = 0.5)
The new code makes the arguments for the method used for smoothing more obvious. I can see the value but it's made work for me in the short term.
New ggplot 2.0.0 code:
# Add the line to graph using methods.args (New: Jan 2016)
p <- p + geom_smooth(method = "nls",
method.args = list(formula = y ~ bot+(top-bot)/(1+( x / LD50)^slope),
start=list(bot=20, top=95, LD50=3, slope=-12)),
se = FALSE)
Thanks to 오세진 and Ali for commenting on my scripts and bringing this to my attention.
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