R for Biochemists

R for Biochemists 201 launches in November 2021

A site to help Biochemists learn R.

How to use this site...

Join R for Biochemists 201

Read Data visualization with the programming language R

Starting points

Starting points for biochemists:
A protein assay An enzyme kinetic plot Visual Index Study at Cardiff

Visual Index

Five most popular plots

Drawing a proteomic data volcano plot....



Counting and identifying stained cells step by step


Visualising some CLL proteomic data for VizBi2016


A bubble plot to explore UN data on researchers...



Principal Component Analysis with published CLL gene expression data (Herishanu et al, Blood 2011)



Protein Schematics and phylogenetic trees

Drawing NFkappaB protein schematics with ggplot2..


Domain structure of a protein

Human Kinome Phylogenetic Tree





Maps


Scraping and visualising global vaccination recommendations with R...


Making a Namibia choropleth



Mapping SQL Relay locations using ggplot...






Other data visualisations



 



Wordle showing what I tweet about

Visualizing a distance matrix

Disease Burden in Wales - faceted ggplot for SQL Relay

Plotting the values from a microscope picture of a leukaemia cell

Athena SWAN stacked barchart

Facetted enzyme kinetics plots in ggplot

Venn Diagram of Protein Lists
  
Volcano plot of exosome proteomic data

Protein Assay plotted with ggplot

Cell death curve plotted with ggplot










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R for Biochemists

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R Markdown Slideshows

  • Analysing a protein assay with R
  • Exploring R data structures
  • The chemical logic of glycolysis

Available on Github

Selected scripts available through Github.

Pages

  • VizBi 2016 Tutorial
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  • About R for Biochemists

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Useful R sites

  • R-bloggers
    A modern introduction to probability and statistics [book review]
  • Quick-R: Home Page
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